YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573599
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALFAVSRS AIALRSIAPR SSTATTSSFL ALARLYSSGK FPPHTVINMP ALSPTMTQGN  60
   61 IQSWAKKVGD ELTPGEAIAE IETDKASMDF EFQEEGYLAK ILLDAGAKDV PVGQPIAVYV 120
  121 EDAGEVAAFE NFTAADAGEA PKPAPAAEEE APKKEEPKAS TSTSAPASTP SPSSKKAPTD 180
  181 RIIASPFAKT IALEKGISLK GIKGSGPNGR IVAKDLEGVE PQAAAAAAPA AAAATAGAAP 240
  241 SATASYEDIP ITSMRKTIAS RLLQSTQQSP SYIIQSQISV SKLLKLRASL NATAEERYKL 300
  301 SINDLLIKAI AKTCVRIPEV NAAWLGEQGV IRQYKNVDVS VAVATPTGLI TPIVTNAESK 360
  361 GLAEISNQVK DLGKRAKVGK LLPEEFQGGT ICISNLGMNH AVTAFTSIIN PPQSAILAIG 420
  421 TTEKKAVPSE VNEQGFVFDD VITITGTFDH RVIDGALGGE WMKELKRIVE NPLEMLI

Type	Start	End	Confidence
Signal Peptide	1	37	0.85
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	477	0.99