YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573621
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELNTTDKQV HTRRFSSREI EVISGLLAGF STTIVTHPLD VIKIRLQLSR DTPKTTHPLE  60
   61 SIISVIKKIN QDAKVAYKLN HKPKAFNYLI QYYRGITPNL IGNISAWGIY FALYAEFKSK 120
  121 VKTNNTTMNY FASSVLAGLS TSIITNPLWV LKTRILGSSR NESNAYRSVT DGIRQMLAKE 180
  181 GITSFWKGTI PSLFSVVQAS LQITIYDHIK VYLSSPHHKS ESIGATSHLS TWQYLYSSAS 240
  241 SKIISMLILY PTQVVRSRLQ YSQDSSSSIV SIVKELYYKE GGLKGFYKGI GANILRVLPA 300
  301 TCVTFVAYEN VKRYLM

Type	Start	End	Confidence
Cytoplasmic	1	21	0.81
Transmembrane Helix	22	39	0.44
Non-Cytoplasmic	40	94	0.48
Transmembrane Helix	95	114	0.68
Cytoplasmic	115	127	0.32
Transmembrane Helix	128	150	0.73
Non-Cytoplasmic	151	316	0.52