YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RBD2_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINFDEFPPK YDPSLRPPAL TTGLIVFTFM LCVIKSVTSY TFESLILYPR APLDLNLNSI  60
   61 SLYSLFHVNF FHWICNIFTL ATPLAVFETR NGTIHTGVTL NLLTVIAALQ YCIVGLIFYP 120
  121 NTGVIGLSGI AFSLMSYMAY HESKFRPIMH TFHLSNSLEI KLYTLYVPFV VAIVFMILFP 180
  181 SSSLPGHLFG ITTGYLLSYG YIDKLYPPSK VITTIENKLS SLINFLELIV TFYKEEESLV 240
  241 TRGSVGYKPL FNQDIEHGAA NAASHGSSAF VGETRVLGTR ESTV

Type	Start	End	Confidence
Cytoplasmic	1	18	0.93
Transmembrane Helix	19	39	0.91
Non-Cytoplasmic	40	64	0.86
Transmembrane Helix	65	87	0.83
Cytoplasmic	88	96	0.73
Transmembrane Helix	97	117	0.89
Non-Cytoplasmic	118	121	0.70
Transmembrane Helix	122	141	0.93
Cytoplasmic	142	161	0.93
Transmembrane Helix	162	179	0.98
Non-Cytoplasmic	180	284	0.62