YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573656
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALNIIPVF FLVGSVLLLI LTIINGAGTS SVLGKFYWSE TDTSGLTGVP YNKTRWTFYR  60
   61 MCGVDHNKNA HCGKSQAAFP YSPEDNFGRN SGIPQNFIDD RDTYYYLSRV GWAFILVGLF 120
  121 FGVTAMVAAP LNFCYFVAGI VGSTTAFVSL LFTITAACCI TAAHTKGRRE WNRAGFPTVL 180
  181 GAKAFGILWT AVACLLISFV SLVVLTCLSR TSTRRRNRGV GVTNGSEVTP RGEQETYAKE 240
  241 SSGEIPRGEY ESGNHPVTGP GEGERLSNAS KFRFFRVKRA KSEDV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.79
Transmembrane Helix	7	29	0.87
Non-Cytoplasmic	30	111	0.84
Transmembrane Helix	112	136	0.86
Cytoplasmic	137	143	0.59
Transmembrane Helix	144	165	0.91
Non-Cytoplasmic	166	184	0.82
Transmembrane Helix	185	208	0.94
Cytoplasmic	209	285	0.86