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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76573662
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTISLLYS LLILIIQVGA ARKDAQTTPI IVAPEAKTTT TTSSSLSSST TTTTGKPNNG  60
   61 KKSPGKPTTD SNDIVQITLQ RPTTPPLLSQ ETQLKGSGDT KAGQAISGST TTSVPSSIIY 120
  121 ENNEDKSLFK VLFTIPPNDI FYNADFNFGN NDTNNDIQLR LDLIQPEIWV LNKYNFPPCE 180
  181 DFLANTNSPT TTKTTPSTFT STMDYNYVLS CASYGAYTSS SNPEDMESPT PGVNVQNYQP 240
  241 YIIPYLNSLE ASGEFVTDDI SFNLTTGDPI EFKNMTFLDV NDSNALVGGL GLAGTPKGSG 300
  301 FLYSLVDQGI IESPGYSLWF SNDSNPDTAI AQLLPGVINQ KYYVGNFYQF DMIPHTGFRY 360
  361 NASYQEQNQD LFNLILPVIQ ISDILMVNLN SGQKLTMKSN DDQIPVLLDS RASNFYLPLE 420
  421 VIINLAIQTR AYYSSELTRW LVTCHPLLDV KAAIEIQIGG LTVSVPISKF IGRAVYNGSS 480
  481 LNFENGAEAC VLKVVPSSVT GYNMLGLPFL KQIYLAVDNE GKKIALANSN KYLKMTKQDI 540
  541 FNDVANPDQH VYNNTAGELA DITNSNSSSS DTTSSIESGN SGISGNSIDY IKSGKIPFAT 600
  601 VYSESTEGTF IYSSLSQTSG ATVILDIPAR FSGASIKSGL IYLNGDSSTS VTTSAINSTS 660
  661 TSKAQANLNG QMNYVEVGTM KFPTAILSLV LSIFLIIITL L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle