YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573663
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.86
Transmembrane Helix	47	67	0.85
Non-Cytoplasmic	68	75	0.78
Transmembrane Helix	76	98	0.89
Cytoplasmic	99	136	0.76
Transmembrane Helix	137	156	0.66
Non-Cytoplasmic	157	163	0.56
Transmembrane Helix	164	186	0.82
Cytoplasmic	187	192	0.78
Transmembrane Helix	193	210	0.94
Non-Cytoplasmic	211	221	0.77
Transmembrane Helix	222	243	0.89
Cytoplasmic	244	259	0.82
Transmembrane Helix	260	279	0.95
Non-Cytoplasmic	280	290	0.77
Transmembrane Helix	291	315	0.84
Cytoplasmic	316	322	0.71
Transmembrane Helix	323	347	0.74
Non-Cytoplasmic	348	351	0.64
Transmembrane Helix	352	373	0.79
Cytoplasmic	374	396	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPVTSEESS GVSTRESFEI EDDSLQSDSN LNPLGVSLYG SKTIESIVYI LGWYFFSLSI  60
   61 SIYNKWMFGS GLDFKFPIII TSFHQLCLCI LSCVVLYLKP NLRPLHTTNV STPTSTNGIS 120
  121 GQTIGKFLQS LLMDFPIYIR QIFPCSIASA GDIGLSNVSI SLITLSLYTM LKTSSLMFVL 180
  181 LFGLLFKLEK FNWRLIYIVA IMTISVIMMT DKPESGSSSS SSSSVGIFMV LMASMLSGLR 240
  241 WSFTQILLKK NPYTPNSIST IFYISPGMCI ILFSLGLIFE GWTNFINLEI WITKGLFTTI 300
  301 ILLIIPGVLA FMMTLCEFKL LTVAQVITLS VAGIFKELLT IILSSIIFGD KLSLINILGL 360
  361 ILTFMDILWY NYYRYYENED HNNGNSKSVL REDLER