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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76573665
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQIEVISSS SSSSYLSNSW NYINHLPLFS LSSSNEFTTI TNNHNNNTSS QYQGLNKWLS  60
   61 CNTQEDGWGP LSSTYNDLTP CFLQGILFGI SAILMILVGI YQIIYLRNKK ITVGNKINWN 120
  121 FYLKLFLVVI QIGFQIGLIL VFNNDIGIIK LSLILNSIAT MVALGIHYLE QFKSTIPNGV 180
  181 LLFYWLFQVI LNLARIGNLY LRNSFGKNND KGFANLVILS TINAFIILIV EISFPIQPLN 240
  241 NYYHRVSLKE SPLDQANVFS RITFDWMGGL MKKGYHKYLT EEDLPSLPKS LKANKTTKDF 300
  301 DHYWNAQSTN NKSLTWAIAQ AFGGQFLLGG IFKGAQDALA FVQPQLLRLL IKFVNDYSKS 360
  361 VKKGDPIPLT RGLLISVSMF IVSVVQTASL HQYFQRAFDL GMKIKSSLTS VVYNKSLVLS 420
  421 NESKQESSTG DIVNLMSVDV QRLQDLVQNL QIIWSGPFQI LLCLYSLHEL IGNAMWAGVA 480
  481 IMIIMIPLNA VIARTQKRLQ KTQMKYKDER SRLINEILNN IKSLKLYGWE QPYLKQLNYV 540
  541 RNEKELKNLK KMGIFMASSN FTWNLAPFLV SCSTFAVFVW TSNKSLSTDL VFPALSLFNL 600
  601 LSFPLAVVPM VITNIVEAQV AIGRLTKFLT GSELQTDAVI RSPKAKNIGD TAVSIKNGTF 660
  661 LWSKAKGEQN YKVALSNINL TCKKGKLDCI VGKVGSGKSS IIQAILGDLY KLDGEVNLHG 720
  721 KVAYVSQVPW IMNGTVKDNI LFGHRYDPQF YQIVLKACAL TVDLSILPKG DKTEVGEKGI 780
  781 SLSGGQKARL SLARAVYARA DVYLLDDPLS AVDEHVGKHL TDHVLGPNGL LKSKCKILAT 840
  841 NNIKVLSIAD TLNLVSDGRL IEQGTYDDIM KQESSKIRQL IESFGKKKDD SPTPTPSSQT 900
  901 DTNNEVEIKI KDDDINLDDL DSECDLEVES LRRASEASLV VDDEERQLGP PEEEEEDEDT 960
  961 KARKEHLEQG KVKWEVYGEY AKACGPINVV IFLGFALGSY LVNVASTFWL EHWSEINTKY1020
 1021 GYNPNVGKYL GIYFLLGIGY SLASLIQNTY LWIFCTIQGS KKLHNSMAVS VLRAPMTFFE1080
 1081 TTPIGRVLNR FSNDIYKVDE VIGRVFNMFF SNSIKVFLTI VVISFSTWPF LFLILPLGVL1140
 1141 YIYYQQYYLR TSRELRRLDS VSRSPIFANF QESLTGVSTI RAYGKEERFK FLNQSRVDKN1200
 1201 MSAYHPAINA NRWLAVRLEF LGSIIILGAA GLSILTLKSG HLTAGLVGLS VSYALQITQS1260
 1261 LNWIVRMTVE VETNIVSVER VLEYSRLKSE AAEIIPDHRP PQDWPQQGEI KFNDYSTKYR1320
 1321 PELDLVLRNI NLDIKPKEKI GIVGRTGAGK SSITLALFRI IEAFDGNINI DGIDTSSIGL1380
 1381 YDLRHKLSII PQDSQVFEGT IRSNLDPTDE YTDDQIWKAL ELSHLKDHVL KMHNQRETTE1440
 1441 EEEEEEEENG ETNPLLVKVS EGGANLSIGQ RQLMCLGRVL LKLNYSNILV LDEATAAVDV1500
 1501 ETDQILQETI RNEFKDKTII TIAHRLNTIL DSDRILVLEK GQVAEFDTPS NLLKNKDSLF1560
 1561 YALCEQGGFI NDEPKVTAIE 

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