YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.10578, orf...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTSVFIAIF NLLVCALAYT DLTGSIKIND KKITLGEFNT QEVKQLTINS PKDIIEIDLK  60
   61 SKDIKGKPEQ IMVSLADVKN PAISTHYVPV VKESKIKLNI KALSIPEVLK TKDKLVLTIV 120
  121 IADSKSKNNM IRRLVEVLPS PEFKSTSRYQ AKPRIGIQPE IHHIFREDER TVNPIVPVVF 180
  181 IIAAFTLLLG LFGSWVGFIG IDNLFRTFKT ISKVQLLHNV SFLISVLGFE LNFVKYYLGQ 240
  241 SIFTTLFYGF ILSIPCVYFG VSVLRSLAKN RALGK

Type	Start	End	Confidence
Signal Peptide	1	18	0.98
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	174	0.99
Transmembrane Helix	175	199	0.88
Cytoplasmic	200	215	0.84
Transmembrane Helix	216	234	0.93
Non-Cytoplasmic	235	244	0.68
Transmembrane Helix	245	264	0.94
Cytoplasmic	265	275	0.84