YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.10575, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFLSAKILL YIRVFALVVI SFFLIKDPDA LSMTGFIVLL GQAMQVPLIR LTPTNPLLGM  60
   61 ASIVFISLAL SDLIPLLAEN WSYFENLVPI RLSGYFCLAA YIYFVPTSIV SNSLVITYVL 120
  121 FEIWGNFLIY NNLRDEKYYR MKKFVEENSE AIRTAHDEQV RVVELDE

Type	Start	End	Confidence
Cytoplasmic	1	8	0.86
Transmembrane Helix	9	25	0.96
Non-Cytoplasmic	26	56	0.47
Transmembrane Helix	57	78	0.88
Cytoplasmic	79	86	0.49
Transmembrane Helix	87	107	0.64
Non-Cytoplasmic	108	108	0.42
Transmembrane Helix	109	133	0.62
Cytoplasmic	134	167	0.85