YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SEC62_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPTPPQTG QFQVATSAQR SPVAVNIVNY LFQNPILKQR TGLLDNTNDI EFFRFKRLQR  60
   61 ALLSDDYKQK QQNPKNGLIP VANNEDVQKV FVLLIQNQLL LPLQKLHYAE VKAVKGWKPN 120
  121 KEKPTLKRAD KAVMDPDVYY GWLYQKPNPY ILLYSFLAIA GVFAVILFPL WPNFMKRGVW 180
  181 YLSMGALGLI ALFFATAIVR LIIYIISLVA FPKPFWLFPN LFEDCGVIES FQPVYAWEEP 240
  241 KKKKGKKKKE PKLEVVEEKV GSSSGDVKVT GSELSNGSST TGKRKVTLEE VEE

Type	Start	End	Confidence
Cytoplasmic	1	149	0.90
Transmembrane Helix	150	171	0.94
Non-Cytoplasmic	172	180	0.76
Transmembrane Helix	181	204	0.86
Cytoplasmic	205	293	0.88