YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COQ4_CANAL
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSTVNNTR IKCGHIDQRR NYLFTTLAGT VLGSFLWSKN NVLASKMENG ELHYHDPNLK  60
   61 FNKKLFNGKP PFERRTPDYP GHVPLYNFEK VLMFLGSSMG AFFHPEENKY IVALGESTAI 120
  121 TPILQNLRHK MLSDPVGRTI LREKPRMTSD SLNLTYLRSL PDNTIGKNYV NWLDKEHVSP 180
  181 DTRVAVRYID NEELAYIYQR YRECHDFYHA ITGLPIIIEG EIAVKVFEFA NIGIPMSGLG 240
  241 ALFAPLRLKS SQRQRLREIY YPWAIKNGLF SKPLINVYWE KILEKDVDEF RQEMGIQQPP 300
  301 DLRNMRKEYF ARKKLEKQLQ GGK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.53
Transmembrane Helix	21	37	0.46
Non-Cytoplasmic	38	323	0.83