YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.10445, orf...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILRGHKLP KSSKILLGLL TGISLLLLVL KYQQFQSLQS SSDEIKFHDV KISFIQLIPR  60
   61 STIYNPWVLI LSIFAEISII SFIFSFVVLY IGSKFAERFW GNYLEVIKFV IIVGSITNLI 120
  121 TVIIAIISNI IRQDGKNMDQ PLGGGISYYF GFLVVCKQLI PEHNIVLFQG LINFRVKHVP 180
  181 FALIIFLSLW SIIISQSLYP AIPSIGSFFV SYFYLRFFQS LNTEPTLPIA TTTTSTTTTN 240
  241 SGNNGSSIDM QNSSIMIGDA SDTFQLIDFF PQVTRPILTP IFQHGYDISV FLGIITPFND 300
  301 EIVEQSNLRA QKRQEQTNQT QKNVAKSVAE RRRQVALQVI EDRINKETAA NGAVTNQ

Type	Start	End	Confidence
Cytoplasmic	1	14	0.84
Transmembrane Helix	15	32	0.91
Non-Cytoplasmic	33	67	0.93
Transmembrane Helix	68	91	0.91
Cytoplasmic	92	105	0.90
Transmembrane Helix	106	128	0.90
Non-Cytoplasmic	129	141	0.81
Transmembrane Helix	142	161	0.81
Cytoplasmic	162	177	0.73
Transmembrane Helix	178	202	0.80
Non-Cytoplasmic	203	357	0.59