YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4889, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.77
Transmembrane Helix	110	131	0.88
Non-Cytoplasmic	132	138	0.43
Transmembrane Helix	139	158	0.92
Cytoplasmic	159	197	0.60
Transmembrane Helix	198	220	0.84
Non-Cytoplasmic	221	227	0.73
Transmembrane Helix	228	248	0.92
Cytoplasmic	249	354	0.84
Transmembrane Helix	355	375	0.93
Non-Cytoplasmic	376	402	0.93
Transmembrane Helix	403	425	0.92
Cytoplasmic	426	445	0.87
Transmembrane Helix	446	467	0.94
Non-Cytoplasmic	468	474	0.77
Transmembrane Helix	475	495	0.89
Cytoplasmic	496	505	0.83
Transmembrane Helix	506	531	0.83
Non-Cytoplasmic	532	540	0.85
Transmembrane Helix	541	562	0.94
Cytoplasmic	563	584	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFDTTVPQE YYDENFIPGT TNILTGKTTI DESSSITTQK SLKRDPKTGL VLMPQPTSSP  60
   61 NDPLNWSPFR KFAQLTLLSF ITALTAATSN DAGATQDSLN EIYGISYDSM NTGAGVLFIF 120
  121 IGWSCMFFAP ASSLYGRRIT YIICLLAGTL GCVWFALSKR TADTIWSQAF VGMSEACAEA 180
  181 QVQQSLTDLF FAHQLGTVLT IYISATSIGT FLGPLIAQYI AQAQTFRWVG WWGAIICGAT 240
  241 LIVIIFGCEE TVFDRQLYTK VLESENVTQI PDPSEEKKQD NPLTNNTIPH EKKNSMEQEL 300
  301 SHEYITANNN EHDVVPIDPE TLNEKKKSYW QRIAIITPAP YLQGLGFKQY LERFIIYFKI 360
  361 FTLPAVWFSG LLWGLQDTYM TFFLTTQDTY FYNPPWNKSN AGVAIMNVAT LIGAVIGCIV 420
  421 SGLFSDYHVI WLAKRNNGIM EAEYRLYLLV ITLIISPVGL IMFGVGAARE WPWQVIYVGL 480
  481 GFIGFGWGSI GDTSMSYLMD AYPDIVIQGM VGVSIINNTL ACIFTFACSY WLDGSGTQNT 540
  541 YIALSIIDFA TIALVFPFLY YGKTFRRKTK RLYVSMVELT QGMG