YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68464899, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNIHTTRLV KLKPIRLLQF NRSVKTLTMD WKPMKAVPGN LRTLEHQSKM PTIRRVLLGL  60
   61 MYAMPIISFA LGCWQVHRLQ WKTDLIAKCE NNLAAPVIPE LPPNLDPSVI ADFEYRRFKC 120
  121 RGRFDYDQEM FLGPRLKDGE LGYLVVTPFI RKNGGDPILI ERGWISKDKV VPSSRSSGYL 180
  181 SHLARPQGEI EIEALFRVMP KKSFLQLEHE QGSRLFHVPD VPAMAKQSGS LPIYCQMIYD 240
  241 LHDHIDWRKD ENGQQQKPSV ISSLLFSKKK DSDAAFIATN ANKDETLQFQ EFEFVNEGVP 300
  301 IAAKPFIKFS NNHLQYLITW FGLSIGSTVL LLFSIYKSKQ FATAEQLLAA KRKDMQKKA

Type	Start	End	Confidence
Cytoplasmic	1	55	0.87
Transmembrane Helix	56	74	0.86
Non-Cytoplasmic	75	315	0.95
Transmembrane Helix	316	336	0.89
Cytoplasmic	337	359	0.88