YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GET2_CANAW
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPVVDTAE LSAEEKKRLL RERRQAKMSK GKATARLNDI LSQGSSVKTS GVKSVLDQEK  60
   61 EATPSHDEDP EIQDITEITT PPPRTPPIGE DAPQDIDKIF QSMLQQQGQG ADTAGDPFAQ 120
  121 IMKMFNQVEG GDSPPSESAT STQDPAELKY RQELLEYNTY NQKLWKFRFL LVRVSVTLFN 180
  181 FFYHYINLSN FHASNYAYVR DLSSEKYPVR DFFTWFATTE VVLVAAYYSI FHSLGLFHAA 240
  241 NQNSFVLKAM SMGSMVLPQL EHYKPLVARF LGYYELLGIV LGDLSLVIVL FGLLSFAN

Type	Start	End	Confidence
Cytoplasmic	1	168	0.95
Transmembrane Helix	169	186	0.82
Non-Cytoplasmic	187	211	0.80
Transmembrane Helix	212	236	0.71
Cytoplasmic	237	270	0.55
Transmembrane Helix	271	296	0.84
Non-Cytoplasmic	297	298	0.56