YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.12270, orf...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYFFKLMKY QTSTKSTALA RLSLTAQHLH LSRCSSTSAT PDIIPINQGT KFTPDYTNYA  60
   61 TTPNGKIVSY FHDIALNLNK ETREANMVVE IPRWTNAKFE INTKTPGNPI VQDIKKGRVR 120
  121 FVKNLFPHHG YIHNYGAFPQ TWEDPTTKHH GLFGDNDPLD VCEIGSKILS TGDVRRVKIL 180
  181 GSIALIDDGE LDWKVIVINV HDPLFKEVND INDLDEKCPG LLDTTRQWFR DYKLADGKPQ 240
  241 NDFAFNGEYK NANETIDIIE QCHKSWQQLI NGETKTDKTP DITNTTVKGS PGFTDTISVS 300
  301 LNNPSRANAA IPVDVEANYF IKTS

Type	Start	End	Confidence
Signal Peptide	1	34	0.58
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	324	0.99