YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.12227, orf...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFARSPFIST IFKRSIGSVR TTIIGTGTTT IPKQYQLFNF NNLITNFKSS SSRSSYGGSS  60
   61 NYSNYSSSNN SNNTLKILFA STGSSFLLLS TFARKIHNDT GSLTQYQQQQ QQPSLDLSIS 120
  121 KQQPLQKQYH ESRFSNYLNY EELTIGSVVG LFLGVIIGKL SQVIVFVSLS SYFLIEFLEN 180
  181 KNIIHIPWNY FITIGKEKIN LKQLFFEKPS FKISFVLSFI IAAYNV

Type	Start	End	Confidence
Cytoplasmic	1	15	0.69
Transmembrane Helix	16	31	0.28
Non-Cytoplasmic	32	74	0.54
Transmembrane Helix	75	93	0.42
Cytoplasmic	94	142	0.44
Transmembrane Helix	143	166	0.57
Non-Cytoplasmic	167	226	0.57