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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.12219, orf...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPIKLLIFI LGYLLSPTLQ QYQQIPPRDY ENKNYFLVEL NTTNSQKPLI DFISHYRGHY  60
   61 NFEHQLSSLD NHYVFSIDKS HPHNSFLGNH NSNEYNLMKR QLGHEQDYDE LISHVESIHL 120
  121 LPMKKLSKRI PVPIEMEDVV FDNRDDTGSD NHEATDEAHQ KLIEIAKKLD IHDPEFTTQW 180
  181 HLINLKYPGH DVNVTGLWLE NILGQGIVTA LVDDGVDAES DDIKQNFNSE GSWDFNNKGK 240
  241 SPLPRLFDDY HGTRCAGEIA AVKNDVCGIG VAWKSQVSGI RILSGPITSS DEAEAMVYGL 300
  301 DTNDIYSCSW GPTDNGKVLS EPDVIVKKAM IKGIQEGRDK KGAIYVFASG NGGRFGDSCN 360
  361 FDGYTNSIYS ITVGAIDYKG LHPQYSEACS AVMVVTYSSG SGEHIHTTDI KKKCSATHGG 420
  421 TSAAAPLASG IYSLILSANP NLTWRDVQYI SVLSATPINE EDGNYQTTAL NRKYSHKYGY 480
  481 GKTDAYKMVH FAKTWVNVKP QAWYYSDVIQ VNQTITTTPE QKAPSKRDSP QKIIHSSVNV 540
  541 SEKDLKIMNV ERVEHITVKV NIDSTYRGRV GMRIISPTGV ISDLATFRVN DASTRGFQNW 600
  601 TFMSVAHWGE TGIGEWKVEV FVDDSKGDQV EINFKDWQFR IFGESIDGDK AEVYDITKDY 660
  661 AAIRRELLEK EKQNSKSTTT TSSTTTATTT SGGEGDQKTT TSAENKESTT KVDNSASITT 720
  721 SQTASLTSSN EQHQPTESNS DSDSDTDDEN KQEGEEDNDN DNGNKKANSD NTGFYLMSIA 780
  781 VVGFIAVLLV MKFHKTPGSG RRRRRRDGYE FDIIPGEDYS DSDDDEDDSD TRRADEDSFD 840
  841 LGHRNDQRVV SASQQQRQYD RQQDEARDRL FDDFNAESLP DYENDMFKIG DEEEEEEEGQ 900
  901 QSAKAPSNSE GNSGTSTKKY KDNEADEDHK DVVGTQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle