YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4720, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHFEHPDVG STVSHHNMDH NMPGMEDKCS MNMLFTWDWK NTCIVFKWWH VKTEIGFVLS  60
   61 LLAIVLLGAL YEFVKAWFSK WERNELATLG ASNASTITQE KRFKIKRGVL YGFQVIYSFW 120
  121 LMLVFMTYNG WYMLAVGVGA GLGNCIWGSS GESSSSRSLS CH

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.64
Transmembrane Helix	55	74	0.91
Cytoplasmic	75	107	0.66
Transmembrane Helix	108	126	0.66
Non-Cytoplasmic	127	129	0.60
Transmembrane Helix	130	150	0.81
Cytoplasmic	151	162	0.83