YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.6005, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	189	0.99
Transmembrane Helix	190	211	0.91
Non-Cytoplasmic	212	229	0.89
Transmembrane Helix	230	252	0.92
Cytoplasmic	253	262	0.88
Transmembrane Helix	263	281	0.93
Non-Cytoplasmic	282	286	0.62
Transmembrane Helix	287	308	0.83
Cytoplasmic	309	321	0.79
Transmembrane Helix	322	345	0.77
Non-Cytoplasmic	346	366	0.90
Transmembrane Helix	367	387	0.93
Cytoplasmic	388	452	0.96
Transmembrane Helix	453	473	0.90
Non-Cytoplasmic	474	490	0.84
Transmembrane Helix	491	513	0.92
Cytoplasmic	514	520	0.92
Transmembrane Helix	521	542	0.95
Non-Cytoplasmic	543	549	0.88
Transmembrane Helix	550	573	0.90
Cytoplasmic	574	585	0.90
Transmembrane Helix	586	608	0.81
Non-Cytoplasmic	609	614	0.79
Transmembrane Helix	615	635	0.94
Cytoplasmic	636	744	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYERIETID NPFNDGNIID NDTSTLFVTE NNDDDDDNTI TTTTTTMQKN NDDNQSSGFQ  60
   61 ESSNQDVTTV SSSSPSNSNN NITNNNNNNN RFSNQRNNNK DNFQKPTTNH NEFKDEDEEE 120
  121 EEEEDDDDMF EPIQFKNSDD DDEEEGDGLS SSSLSSDINS FTDNFGNSYH NIDFDNKRYT 180
  181 LKLNFKGKRL VYFTSGFVSL FVSLFGYSQG VVSSLLAFDT FNKYFNQPSA ATIGIVISIQ 240
  241 EIGAMISSIM VAKLSDKFGR KRTLLLGTFI FMIGGSLQAF CPNIFILAIG RVFSGMGVGI 300
  301 LSTIVPSYQC EISPSEERGK LVCGEFTGNI TGYALSVWVG YLSYFIQDIG DSRNQPHSFT 360
  361 ANLSWRLPLF IQVVIAFVLF LGGFFIVESP RWLLDNDMDQ QGFHVLALLY DSHVESTKPK 420
  421 SEFFMIKNSI LQERITTPKS QRTWKHLLTH YKIRVFVACS SLIFAQFNGI NIISYYAPLV 480
  481 FEQAGFDNAN ALLMTGINGI IYLLSTIPTW FLVDSWGRRP ILITSGIAMA ICLFLVAAFM 540
  541 HINKSYTPSV VAVFVIIYNA SFGFGFGPIP FLLSSESYPL SVRSKGASLA VSCNWFSNFV 600
  601 VGLMTPILKQ EIKWAMYLFP ASSCVLSVIV VLLFYPETKG VELEDITRIF DEFYATSPTK 660
  661 RVKIRGLRTK RKDKGKRSGE KYKAKYNPLS GGGGTGTGTS SSTTTTGDFI DDQEAFEMRA 720
  721 LNEFDFESDN DDDINVSHTR RQML