YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ATG9_CANAL
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSYNPYK NNVNDRLINN STDSFQDNDQ GIPNNNDTFL SRIFGLNSIY NQLQDNYQYY  60
   61 DPEFDSSLNQ QLQQSIQEND EAEDESLLPQ HQQQQQQAAP MDLSIQDKSA KQKSKSSSLL 120
  121 NSDSDSDLSS SEDSYVRPNI PQIPSTPIET ENQGSSSKIK FSIPQRAKNF VGKLHPHHEP 180
  181 TLPVYQTPQE FRRNLPQQQR ASATVNTNYQ RTRNNNRRFI IPPKERALYL WANITNMDEF 240
  241 LSDVYYYYRG RGLLNIVLSR GFDLIILIFI LIFTVFLKWG IDYSIFFDNL HQEESKHITL 300
  301 NDMIIPNYFA TIPLSIKFIL FGFSVYILLR SVQLYLDYNY KLKELKNFYH YLLDVTDDEL 360
  361 MTISWKTIVE KLMLLKDYNS LTSTTKSNNF SENHYVNDLS SKVRLNAHDI ANRIMRRENY 420
  421 MIALINKDIL DLSVLFMNEK SLLTKTLEWN LKLCIDNFIY NQQGQINGKI LKEYNRNQLA 480
  481 RELTSRFKLA AIINLILSPF IVIYFVLLYF FRYFNEYKSN PASILGLRQY TPYAEWKLRE 540
  541 YNELSHLFNK RLIMSMGPAN TYIDQFPKGF LVVNLMRLIN FISGSILAVL VIMGILLEDE 600
  601 NHSFWSFEIT DGRSALFYIS IFGTIWAITA SSATGTSHES TISTTSQSSN SNSNSNAAST 660
  661 FVYDPEASLR YVAQFTHYLP SSWNKKLHTI QVKNEFCQLY CLKIIIIINE ILSSVLTPFI 720
  721 LWFKISHNSG NIIDFYREYS IHVDGLGYVC YFAMFNFEEK DKNMMSDLNK SKKRRKRMKN 780
  781 KMNKYGKTKM VNPISGKTVN SEIEMTKISK SESERSSDDE SGNEQDYDND EELDYLSYKK 840
  841 DDKMIKSYMY FLESYGGSKQ PQPQPPQQQQ HPQNQNQTVG GLRNRNPIQS IDPAIMTGNY 900
  901 YDQQSLNSSI YNINYKFDDS GLLQDETMNS SSRKKGGVLG MLNQFYKQDI NR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle