YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5960, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAIGDVILR AFNFVFLVIA LGLTGSLAAT TITQHNPQIN FAVFAAAFGL LTSSFYGVFA  60
   61 YFVAAFAWPV ILFVFDFLNF VFTFAAATAI AAGIRAHSCS NQDYLDDNNI AQGSSGRCRK 120
  121 AQASTAFLYF STFIFIASAI FSAISLSKGG LFGHSSRPAP RTGVPTMSQV

Type	Start	End	Confidence
Cytoplasmic	1	10	0.56
Transmembrane Helix	11	32	0.92
Non-Cytoplasmic	33	40	0.53
Transmembrane Helix	41	64	0.86
Cytoplasmic	65	69	0.44
Transmembrane Helix	70	94	0.81
Non-Cytoplasmic	95	125	0.55
Transmembrane Helix	126	152	0.78
Cytoplasmic	153	170	0.57