YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.13379, orf...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTANTSLSQ QLDEKPWVDA SDNSSVQEYQ GFDATASHNI QDLARKLTHG STNGDHHSAN  60
   61 DLARYLSHMS DIPGVSPFNG NISHEQLDPD SENFNAKYWV KNLKKLFESD SDYYKPSKLG 120
  121 VAYRNLRAYG IANDSDYQPT VTNALWKFTT EAINKLKKPD DSKYFDILKS MDAIMRPGEL 180
  181 TVVLGRPGAG CSTLLKTIAV NTYGFHIGKE SQITYDGLSP HDIERHYRGD VIYSAETDVH 240
  241 FPHLSVGDTL EFAARLRTPQ NRGEGIDRET YAKHMASVYM ATYGLSHTRN TNVGNDFVRG 300
  301 VSGGERKRVS IAEASLSGAN IQCWDNATRG LDSATALEFI RALKTSATIL DTTPLIAIYQ 360
  361 CSQDAYELFD NVVVLYEGYQ IFFGKASKAK EYFENMGWKC PQRQTTADFL TSLTNPAERE 420
  421 PLPGYEDKVP RTAQEFETFW KNSPEYAELT KEIDEYFVEC ERSNTGETYR ESHVAKQSNN 480
  481 TRPSSPYTVS FFMQVRYVIA RNFLRMKGDP SIPLISILSQ LVMGLILASV FFNLRKSTDT 540
  541 FYFRGGALFF SVLFNAFSSL LEILSLYEAR PIVEKHRKYA LYRPSADALA SIISELPVKL 600
  601 LMTMSFNIVY YFMVNLRRTA GNFFFYWLMC ASCTLVMSHM FRSIGAVTTT IATAMSLSTV 660
  661 FLLAMIIYAG FVLPIPYILG WSRWIRYINP VTYIFESLMV NEFHGREFEC GQYIPSGPGF 720
  721 ENLPVENKVC TTVGSTPGST VVQGTEYIKL AYQFYSSHKW RNFGITVAFA VFFLGVYVAL 780
  781 TEFNKGAMQK GEIVLFLKGS LKKHKRKTAA SNKGDIEAGP VAGKLDYQDE AEAVNNEKFT 840
  841 EKGSTGSVDF PENREIFFWR DLTYQVKIKK EDRVILDHVD GWVKPGQITA LMGASGAGKT 900
  901 TLLNCLSERV TTGIITDGER LVNGHALDSS FQRSIGYVQQ QDVHLETTTV REALQFSAYL 960
  961 RQSNKISKKE KDDYVDYVID LLEMTDYADA LVGVAGEGLN VEQRKRLTIG VELVAKPKLL1020
 1021 LFLDEPTSGL DSQTAWSICK LMRKLADHGQ AILCTIHQPS ALIMAEFDKL LFLQKGGRTA1080
 1081 YFGELGENCQ TMINYFEKYG ADPCPKEANP AEWMLQVVGA APGSHAKQDY FEVWRNSSEY1140
 1141 QAVREEINRM EAELSKLPRD NDPEALLKYA APLWKQYLLV SWRTIVQDWR SPGYIYSKLI1200
 1201 LVISSSLFIG FSFFKSKNNL QGLQSQMLAV FMFFVPFTTF IDQMLPYFVK HRAVYEVREA1260
 1261 PSRTFSWFAF IAGQITSEIP FQIVVGTISY FCWYYPVGLY ANAEPTDSVN SRGVLMWMLL1320
 1321 TAFYVYTSTM GQLAISLNEL IDNAANLATT LFTLCLMFCG VLAGPNVIPG FWIFMYRCNP1380
 1381 FTYLIQAILS TGLANAKVTC APRELVTLKP PMGETCSSFI GPYTEAAGGY FSTNSDGTCS1440
 1441 VCRIDSTNQF LESINALFSQ RWRNFGIFVA FIGINIILTI FFYWLARVPK GNREKKMKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle