YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13362, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSFAQKVKT FDAFPKVDPQ HQVRSQRGGL STLLTYFCGL LILWIEIGGY IGGYVDRQFT  60
   61 VDDQIRSALT INVDMIVAMP CQFIHTNVED ITHDTYLAGE TLNFEGIHFF VPDSFKINNP 120
  121 NDFHETPDLD EVMQESLRAE FRSEGARVNE GAPACHIFGS IPVNQVRGDF RITGKGFGYR 180
  181 DRSHVPFESL NFSHVIQEFS FGEFYPYLNN PLDATGKVTE ERLQTYMYYA KVVPTLYEQL 240
  241 GLEIDTNQYS LTENQHVIKV DQSTHRPDGI PGIYFLYDFE PIKLVIREKR IPFFQFIAKL 300
  301 ATIGGGLLIA AGYLFRLYEK LLFIFYGQKA VQQNREQKTG GLLDI

Type	Start	End	Confidence
Cytoplasmic	1	32	0.75
Transmembrane Helix	33	54	0.73
Non-Cytoplasmic	55	295	0.68
Transmembrane Helix	296	317	0.84
Cytoplasmic	318	345	0.59