YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13352, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICIECGYSN IDCLYSKYKS DYIKLSVCPE CNKIADKYIE YDSVILFLDI LLLKRQAYKH  60
   61 LAYNLTEMEM EIGSSTNFHI NDNTNFKFFH TYRKLMKLIF MILSFEVYLT WANEEKLLIH 120
  121 SQLINLIFNQ SVVYQYLFFI IKSSLENLIL NLSLQLILRL GYKWGQGPQK INGNIRDKEL 180
  181 FGYKTSVLLV TTMVSGSIRL FPILMFIWPY DNISITKPLI NLIAFINIVE ALRVVTSLGY 240
  241 VELILSLAFS IVIRNIVSKS LLVLIVRLFL DFNFTEVYYN EMYQLYSQIQ TYIRWI

Type	Start	End	Confidence
Cytoplasmic	1	94	0.93
Transmembrane Helix	95	112	0.63
Non-Cytoplasmic	113	132	0.55
Transmembrane Helix	133	154	0.47
Cytoplasmic	155	179	0.86
Transmembrane Helix	180	203	0.80
Non-Cytoplasmic	204	230	0.72
Transmembrane Helix	231	257	0.68
Cytoplasmic	258	296	0.69