YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46445102, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTPHSTSR IPSLNEDTRL SSSSESMPIQ SSSSATAPSS NRSEQRDLED LESQTSPRLT  60
   61 TKQRIQRVLH HFFPVRQTYE RINNGLTTGR MQTNNGRFIG QGTDGVFRNL MAKPDTEEMR 120
  121 QQQELNPPSY EEAAADASPE YWESTMISPM YEDEVFVQGL PVGNIANFVW NALVSVAFQF 180
  181 VGFILCYLLH TSHAAKQGSR AGLGINLIMY GWNLVPQNFG HPDKLPKKYQ PENPNDFDIN 240
  241 KSTKISGKVD GYNSGIFIQN SNADTKDSNG GDWLGGSGSA PYVAYGLIAF GLFIILKSLV 300
  301 DYYRVKQLER AILNPPSNMP VNTNSITGVV DEIDEENRHR EQQQQQQQHQ HQEEEEPYSH 360
  361 QHRNHDDH

Type	Start	End	Confidence
Non-Cytoplasmic	1	167	0.56
Transmembrane Helix	168	189	0.90
Cytoplasmic	190	197	0.48
Transmembrane Helix	198	215	0.49
Non-Cytoplasmic	216	280	0.94
Transmembrane Helix	281	300	0.91
Cytoplasmic	301	368	0.95