YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IOD1_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLSQLWLWL KRLVIFLQVA LEVATGKVLM TLFPERVKQN ILAMGQKTGM TRNPRFAPDN  60
   61 WVPTFFSIQY FWFVLKVRWQ RLEDRAEYGG LAPNCTVVRL SGQKCNVWDF IQGSRPLVLN 120
  121 FGSCTUPSFL LKFDQFKRLV DDFASTADFL IIYIEEAHAT DGWAFKNNVD IRQHRSLQDR 180
  181 LRAAHLLLAR SPQCPVVVDT MQNQSSQLYA ALPERLYVIQ EGRICYKGKP GPWNYNPEEV 240
  241 RAVLEKLCIP PGHMPQF

Type	Start	End	Confidence
Signal Peptide	1	26	0.78
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	257	0.95