YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.12148, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.98
Transmembrane Helix	58	80	0.90
Non-Cytoplasmic	81	87	0.71
Transmembrane Helix	88	110	0.85
Cytoplasmic	111	125	0.80
Transmembrane Helix	126	147	0.70
Non-Cytoplasmic	148	166	0.72
Transmembrane Helix	167	186	0.95
Cytoplasmic	187	195	0.78
Transmembrane Helix	196	217	0.90
Non-Cytoplasmic	218	229	0.83
Transmembrane Helix	230	252	0.78
Cytoplasmic	253	290	0.90
Transmembrane Helix	291	312	0.94
Non-Cytoplasmic	313	345	0.93
Transmembrane Helix	346	366	0.94
Cytoplasmic	367	386	0.94
Transmembrane Helix	387	409	0.91
Non-Cytoplasmic	410	425	0.85
Transmembrane Helix	426	448	0.86
Cytoplasmic	449	466	0.92
Transmembrane Helix	467	488	0.92
Non-Cytoplasmic	489	497	0.87
Transmembrane Helix	498	518	0.94
Cytoplasmic	519	568	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWNKEKSKEA EKGEIREDEL FNTKVDRQTS ASSESSLVHD NSSVDTDHTQ RKLYNRHLQL  60
   61 IAIGGSIGTG LFVTIGTTGL TVGGPLGLLL SYCLSTLLTL LLTSAVGEMV SYMPVDSPFL 120
  121 NMAGRVIDPA FEAAASVNFW VMQSLYIPFE ITAVNGMIHF WRDDYSPAIT FCIQIAIYAA 180
  181 INLYAVRVFG ECEFWFSLAK LILCIGLLFF TLVTMCGGNP KHDAFGFRNW HAAGGPIATL 240
  241 YTTGSLGRFQ GFLGSFRWSS SFTCVGSEYL GMTAGECINP RHNLPIAFRT VLYRLVLFYI 300
  301 GGALSVSILV AYNDPKYLEL TSDTSNAASS PYVVAMQNLG INVLPHIVNA VILTSAFSAG 360
  361 CSYTYTSSRC LYNLAKKGFV PKFFKKCTSH GVPVFCVGLS ICFSLLSLMQ LGSSGSKVLN 420
  421 YMVNLCTGAQ ILNYAFMSIT YIGFYHACKA QNIDRHQFTY RSWFQPYSIY FVCFMYWCLV 480
  481 GILGYNVFMP GKWSVDTFLY NYIMVFVSLA VFIAWKLFRR TKFIKPIDAD LRTGLEEIER 540
  541 HEYEYYEQLE QSSNKPDNKF KSILHWIF