YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI14_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLKYLITF SILLRFGFFF FGLYQDEYMP VKYTDIDYLV FNDASKFVYQ GLSPYLRETY  60
   61 RYTPILAILL IPDNFGKYWY HFGKLLFMVS DVITGLIILK LLSKQQQLSE KKKMILSSIW 120
  121 LLNPMVITIS TRGSAESVLT VMIMLSLYYL LDKDNVILSA IWLGLSIHFK IYPIIYLPSI 180
  181 LYYLSSQETP FLASVPGINL VNAKNLKYII ITLTTLAVVN YLMFLKYGWE FIDNSYLYHV 240
  241 TRLDHRHNFS VYNMVLYYKS ALLEDSNGFD IEKIAFVPQL LLSAVIIPLI FAKEDLISSL 300
  301 FIQTFVFVAF NKVITSQYFI WFLIFLPHFL SKTKLLTTDK ITGISCLLLW IISQATWLYF 360
  361 AYKLEFLGEN TFDNGLMYSS VFFFLSNCWC TMKFIQSL

Type	Start	End	Confidence
Cytoplasmic	1	5	0.93
Transmembrane Helix	6	24	0.91
Non-Cytoplasmic	25	79	0.95
Transmembrane Helix	80	102	0.88
Cytoplasmic	103	118	0.85
Transmembrane Helix	119	143	0.74
Non-Cytoplasmic	144	159	0.67
Transmembrane Helix	160	184	0.69
Cytoplasmic	185	205	0.75
Transmembrane Helix	206	225	0.81
Non-Cytoplasmic	226	304	0.57
Transmembrane Helix	305	330	0.73
Cytoplasmic	331	340	0.66
Transmembrane Helix	341	361	0.89
Non-Cytoplasmic	362	374	0.73
Transmembrane Helix	375	395	0.85
Cytoplasmic	396	398	0.72