YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.12048, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYRGPNQFG NQPPHHGIPS QPQPHIGPIS SSKSPLEQFE DVAKKVEDWI DDYFKVLKPY  60
   61 VPAIGRAFLV ATFYEDTLRI FTQWNEQVYY LHNYRHYWRW LTVLFLINNM VVMTVASTLV 120
  121 IARKKNNIAT IALIVVVIIQ GIGYGLLFDA QFVLRNLSVV GGLVLAFSDS IVRDKRSLNM 180
  181 PGLPMLNNQD NKKYFLLAGR ILLVLLFLGF VFSSDWSLGR VFIIIIGLTS CASIVVGYKT 240
  241 KFSAAIMLIV LFLYNVFTNQ FWAYASQDAR RDFLRYEFFQ VLSIVGGLLL VVNAGAGEFS 300
  301 IDEKKKIY

Type	Start	End	Confidence
Cytoplasmic	1	59	0.58
Transmembrane Helix	60	74	0.38
Non-Cytoplasmic	75	97	0.73
Transmembrane Helix	98	121	0.86
Cytoplasmic	122	127	0.76
Transmembrane Helix	128	148	0.92
Non-Cytoplasmic	149	152	0.75
Transmembrane Helix	153	172	0.84
Cytoplasmic	173	192	0.90
Transmembrane Helix	193	212	0.93
Non-Cytoplasmic	213	217	0.75
Transmembrane Helix	218	238	0.89
Cytoplasmic	239	244	0.74
Transmembrane Helix	245	264	0.91
Non-Cytoplasmic	265	277	0.78
Transmembrane Helix	278	297	0.90
Cytoplasmic	298	308	0.75