YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4646
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMYVYVVVI ICFLPPSFSL KYLPRRTLKL NLLVVVVVLS YIYVYSHISH TFFFFFLIPF  60
   61 NKNFYHQPTQ PTTTILVVSK FHSFLQKERR LASQKNFPIN HRQRREITTT TTTTTTLILI 120
  121 LILYTRRQLI DYTPTKDTIT LGNTH

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.56
Transmembrane Helix	5	23	0.59
Cytoplasmic	24	29	0.81
Transmembrane Helix	30	49	0.88
Non-Cytoplasmic	50	67	0.77
Transmembrane Helix	68	85	0.49
Cytoplasmic	86	106	0.51
Transmembrane Helix	107	125	0.55
Non-Cytoplasmic	126	145	0.70