YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68466442, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVLHQLTTN HTSSLSNLIN NHPTSFSSIL KEVDITNHSL TYIEKLWASY YIYMNNDILA  60
   61 TGLLFFITHE LMYFGRCLPW FIIDKTPWFN RYKIQPTKIP TNQEQWECFK TVLKQHFLVE 120
  121 ALPIWLFHPV CAKLGITYDV PFPNWKIQAI QIAIFFICED FWHFVFHSLF HQGWFYKNIH 180
  181 KVHHKYAAPF GLAAEYAHPV EVMALGVGTV GFPILYAYLA TVYTNMPPLH LFTLTTWIVL 240
  241 RLFQAVDSHS GYDFPWSLNK FFPLWAGAAH HDEHHHYFIG NYASSFTLWD WLFQTECGTY 300
  301 ARKRRERNSR ASAESKHKKT L

Type	Start	End	Confidence
Cytoplasmic	1	146	0.57
Transmembrane Helix	147	166	0.76
Non-Cytoplasmic	167	199	0.68
Transmembrane Helix	200	220	0.81
Cytoplasmic	221	228	0.53
Transmembrane Helix	229	246	0.58
Non-Cytoplasmic	247	274	0.58
Transmembrane Helix	275	293	0.41
Cytoplasmic	294	321	0.77