YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1585, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSDSISQVF EYLNKRDECP TDNDYNGNIG TRISSIFVIM VTSAIGTLLP LLSSKYSFIR  60
   61 LPPMVYFICK YFGSGVIVAT AFIHLLEPAA DSLGNECLTG PITEYPWAFG ICLMTLFFLF 120
  121 FFELLAYQGI DRKIAKESQL DNQGPHTHSH FGDASMYVKK DDEEEDLENQ NEKQADANPY 180
  181 PSHFAHAQEH QDPDVMGTTV NDQSKEQYYG QLLGVFVLEF GVMFHSVFIG LALAVSGDEF 240
  241 KSLYIVLVFH QMFEGLGLGT RIATTNWARH RYTPWILAIC YTLCTPIAIA VGLGVRKSYP 300
  301 PGSRRALITN GVFDSISAGI LLYTGIVELM AHEFLYSGEF KGPGGFKNML LAYFVMCWGA 360
  361 GLMALLGKWA

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.93
Transmembrane Helix	33	53	0.90
Cytoplasmic	54	65	0.81
Transmembrane Helix	66	86	0.94
Non-Cytoplasmic	87	106	0.90
Transmembrane Helix	107	127	0.95
Cytoplasmic	128	212	0.97
Transmembrane Helix	213	235	0.88
Non-Cytoplasmic	236	273	0.70
Transmembrane Helix	274	295	0.93
Cytoplasmic	296	305	0.67
Transmembrane Helix	306	327	0.82
Non-Cytoplasmic	328	348	0.61
Transmembrane Helix	349	367	0.95
Cytoplasmic	368	370	0.53