YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1538, orf1...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRDRTNLFL SYRRTIPRDS FPTRRTRFSD LNNEEENEGL ILSSTIGNQS NRKSKNKSNL  60
   61 KQGVNDFDND DYEDNIELKP MIPNIFDIAK ELDSYLNIIN KDIEELNSMY KKLIIINKLN 120
  121 KLKLEKQIEE INYQILIKFE KCYVLIKKFE YLSNNHQRLK LNYNQQDLEI LINFKKNYAV 180
  181 KIQDKSLIFR NLQNNYMKFL KNDEEEKEEE EEDILNMNDE QATLLNEGND SKSTTPRTTT 240
  241 TTTTTTTTNF TNQQQQQQQQ QVQVQLQLQH QQGNNNIQYL QQREREISKL AHGIIEISTI 300
  301 FKEMESMVIE QGTILDRIDY NLVNTVQDLK QADKELIKAH HYQKRSTKCK IIFFLSLCVF 360
  361 ALLMIFILRP TKTTSPSNNS NSNSNSNSGN PGNPENNNDQ EPTRPNIDKP ANEVNPPPVN 420
  421 KA

Type	Start	End	Confidence
Cytoplasmic	1	348	0.82
Transmembrane Helix	349	368	0.91
Non-Cytoplasmic	369	422	0.82