YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1534
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEILHNLSQ GWTLTLLSSC LCILGTLIIL IDDIYYTCLP KFITSKFKIQ IKQNYRFLNG  60
   61 SLAFSSGCLI FTSLYRLLPS AHEYLANSNN NNNNNINNNN HSGHTHNLDE NGEGADDNHQ 120
  121 WYQFILISSY IMGILICLSF NYILHLFTSQ SVVHCNHGGD VTTDLHDING DLENQIGVHH 180
  181 HHQHHHHGDT LFNDNYNGSD GRGDHNKNSN SVTETTPLID NTKNGVASVP VATARKRKSI 240
  241 IQLILKHDDI EDGSGGECKG YSSAELCTFH NNNNNKISTK LNGDGNECDS NISEELDGGH 300
  301 PGVEEEGEGV VVQQTQQLHY CEIPTLSQEL IENNNNNNNN NNVNAYSYPP ENDIDHFSNT 360
  361 INNFDGNDAN NNNNNNIDMG PLYSIHSKSS HSLHSHAHSH AHSHARSHRS HKIDHHHHVN 420
  421 SPLSRLLTIG IQTTLAITLH KLPEGFITYI TSETNPQLGI SIFISLLIHN FTEGFSMCLP 480
  481 LYYSMNNSTK YPKLKAIIIS STLGGLSQPL GAILGYFFLL FNSHNKNSDN DYDVDKLNRI 540
  541 FGITMAITSG FLTVISLSMY GSSVSFGGNI NFVMTWCIIG ISVIGITSVL T

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.84
Transmembrane Helix	14	36	0.91
Cytoplasmic	37	56	0.85
Transmembrane Helix	57	78	0.90
Non-Cytoplasmic	79	123	0.90
Transmembrane Helix	124	144	0.92
Cytoplasmic	145	422	0.92
Transmembrane Helix	423	440	0.53
Non-Cytoplasmic	441	459	0.55
Transmembrane Helix	460	483	0.73
Cytoplasmic	484	495	0.69
Transmembrane Helix	496	520	0.87
Non-Cytoplasmic	521	539	0.70
Transmembrane Helix	540	561	0.91
Cytoplasmic	562	567	0.61
Transmembrane Helix	568	590	0.87
Non-Cytoplasmic	591	591	0.73