YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5022, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	38	0.83
Non-Cytoplasmic	39	53	0.76
Transmembrane Helix	54	77	0.84
Cytoplasmic	78	95	0.77
Transmembrane Helix	96	113	0.85
Non-Cytoplasmic	114	124	0.65
Transmembrane Helix	125	148	0.88
Cytoplasmic	149	158	0.79
Transmembrane Helix	159	180	0.90
Non-Cytoplasmic	181	215	0.96
Transmembrane Helix	216	235	0.94
Cytoplasmic	236	327	0.97
Transmembrane Helix	328	351	0.87
Non-Cytoplasmic	352	398	0.96
Transmembrane Helix	399	421	0.92
Cytoplasmic	422	440	0.89
Transmembrane Helix	441	459	0.96
Non-Cytoplasmic	460	468	0.72
Transmembrane Helix	469	490	0.91
Cytoplasmic	491	637	0.99
Transmembrane Helix	638	660	0.89
Non-Cytoplasmic	661	671	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLTNFTNF KTIVASIKKY MRFIGPGLMV SVAYMDPGNY STAVAAGSAY KYNLLFSILL  60
   61 SNCLAIFLQI LAAKLGAVTG LDLAANCKAH FGYKTNLILY ALTEIAIIAT DLAEVVGTAI 120
  121 ALNILFHLPL FVGVIVTVID VLIVLMAYRP RGPLLFIRIF ESFVSVLVAA TVVCFGIELY 180
  181 QVSHDSSIHF SVAEVMKGFL PNEDVVDMSD REGGNGLFLS LAILGATVMP HSLYLGSGLV 240
  241 QARLKDYDIK NGFHKPWGKH SIEEPIQEDI TVHEEDDNLT PIATPLIQHQ EQPGFEKDDE 300
  301 STFDGDDEED DHYRPSIHAI KDTMSYTIVE LVISLFTVAL FVNAAILIVA GATLRSGDSK 360
  361 FARDDDNGHE SDSDSDDDYQ NADLFTIYHL LSKHLSPTAG FVFALALLCS GQSAGVVCTL 420
  421 AGQMVSEGFL SWSLPPVTRR LITRALAIAP CLLVVSFSGR EGLAKILNAS QVVLSILLPV 480
  481 VSAPLIWFTC NKHTMRVPIF VRDGDEEIDM EYDGEQSTSV ATSRFKSSEP AIRLQNLRNS 540
  541 HPCANWEDDD DEQLQQLHLQ NEENRLLIGE NTTNLVYSSP PTSNLMSRSN SVSATNGVPD 600
  601 SSSSSSSTTI AAQLPLEVYE DLNQDIFRIK GYKDFSNSLA TSFVAVLVWV FVASLNLYLI 660
  661 GSMLLGYDVP L