YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LCL3_CANAL
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPIPAEPTE NISIFHPKVL LLSAGVTTSL FFGYKFYKRY IKRIRTYLDL TPSIIENNTK  60
   61 LYGYVTRVGD GDNFRFYHTP GGWFFGWGWL RKIPTTRKDL KDETLMIRLC GVDAPEGAHF 120
  121 GKPAQPYSKE ALYWLREYVD GKYVTITPYS IDQYKRVVAR AQIWKWTGRK DVSAEMLKVG 180
  181 YAIVYEGKAE AEFGDNEDWY RKLESRAKLL RKGVWSLGKN LTTPGEFKRI HYRGE

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.91
Transmembrane Helix	14	37	0.74
Cytoplasmic	38	235	0.79