YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.12427, orf...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFTNKQTN TIHSFHHIHH HHIPIMDKST FKQLTNEYDI LYLIYHRSKN QHRQQIWFKY  60
   61 LNMMIRNLRK ILKLQIDINR IRTTTTTTTT TTTTTTTTTT TKDKIDYKTN QIIQYSNKIL 120
  121 KLMKSSYWNY NSILVLGQYI TLGLGLIGSL SKITHLIING INGVQKRGIN RDSFINKMNN 180
  181 DRQRVDGVDV VGSKDLKSNN EDEIDFGEVI PYEEEVEKVS INDEVKNNCK INKSNTLQFQ 240
  241 GKENLQRFDK IDDDTDIQQI KNDDDKFHSK KSKRNLSSLS EEEEEEEEDS NIIFKKSKSK 300
  301 SKSTTIHNQS NIHSEQISIN DENNNKSTST STSTDTKKRK LINTDTIDDI FESSKTKTKT 360
  361 KTKTKTKTFD NKKLKKKDTT TKPLKKIKKK KKSAIDDIFG

Type	Start	End	Confidence
Cytoplasmic	1	126	0.57
Transmembrane Helix	127	148	0.54
Non-Cytoplasmic	149	400	0.98