YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4933, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVEASSSS VVEDSTASNV VQRGNISSFA STTASSNLTT IDTNGKVFKV PDYSIKDILQ  60
   61 AIPKHCYERS LIRSLGYVVR DITMMVIIGY VGHTFIPMVQ IPEYPSLAYG LRGALWMVQS 120
  121 YCIGLFGFGL WILAHECGHG AFSDYQNIND FIGWVLHSYL IVPYFSWKFS HAKHHKATGH 180
  181 LTKDMVFIPY TKEEYLEKNK VEKVADLMEE SPIYSFLVLV FQQLGGLQLY LATNATGQVY 240
  241 PGYSKIAKSH YTPTSPVFDK HQYWYIVLSD IGIILAFTTV YQWYKNFGLF NMMINWFVPW 300
  301 LWVNHWLVFV TFLQHTDPTM PHYTSKEWTF ARGAAATIDR NFGFVGQHIF HDIIETHVLH 360
  361 HYVSRIPFYN AREATDAIRK VMGEHYRYEG ESMWYSLWKC MRMCQFVDDD KEDAKGVMMF 420
  421 RNVNGWGPVK PKD

Type	Start	End	Confidence
Cytoplasmic	1	76	0.92
Transmembrane Helix	77	97	0.76
Non-Cytoplasmic	98	112	0.67
Transmembrane Helix	113	134	0.89
Cytoplasmic	135	212	0.75
Transmembrane Helix	213	232	0.51
Non-Cytoplasmic	233	262	0.52
Transmembrane Helix	263	284	0.88
Cytoplasmic	285	291	0.45
Transmembrane Helix	292	313	0.78
Non-Cytoplasmic	314	433	0.50