YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4923, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLSVIWII GIIFAFISDT ITMLIIGKII NGIAIGMAFV TIPIYQYEII PVQNRGRILS  60
   61 IFIFSCALGN LFIYVIRLIS ERFLNESKYS RLFWAIEVIP LVFAATFIAF IPESPKWLAA 120
  121 NCEWTSAADV LESIEVKNSS ILKRRKTKED RIRLGDKHYV IKKYSTGVCI KSCSINGLFG 180
  181 KKYIKEVCRG ILLLFFVDFT STSKILESLD YICQSCQIMG ESLKTVTIFS LLMRVLFATA 240
  241 PILIIDMMRR KDVLVFGMFL TTIVIISYMI LFLGFSIPIP KSEQPSLDWA MRVVFYPEKA 300
  301 SVVLALTVFL DVVYYSMLVP TCWLYIIETF STSSRIKGWV VIMSLHWLFE ACTSLSFSFL 360
  361 MEELNGWLFL IISFICLGGL FFTTQLEETK GKFEFDPEFI MKESQYELSD DKTLSAQPAN 420
  421 LKCFDESSSS NYVSSRGSKN IRDLTVPQDS NIKGKPFNSF KKSVKESNIS KPIMNPWETP 480
  481 YGSMESFLNN EKLNQQPANA SNGNVTVTKK LADAYNRL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.58
Transmembrane Helix	7	41	0.75
Non-Cytoplasmic	42	57	0.64
Transmembrane Helix	58	78	0.94
Cytoplasmic	79	91	0.78
Transmembrane Helix	92	111	0.95
Non-Cytoplasmic	112	224	0.89
Transmembrane Helix	225	245	0.88
Cytoplasmic	246	253	0.84
Transmembrane Helix	254	277	0.90
Non-Cytoplasmic	278	302	0.88
Transmembrane Helix	303	327	0.84
Cytoplasmic	328	337	0.88
Transmembrane Helix	338	359	0.90
Non-Cytoplasmic	360	365	0.78
Transmembrane Helix	366	384	0.95
Cytoplasmic	385	518	0.96