YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238878295
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVPSILATT ALLTVGGYML FTGAGESFNI GEFLESTSPY MWASLGIGSC IGFSVVGAAW  60
   61 GIFITGTSIL GAGVKAPRIT TKNLISIIFC EVVAIYGLIM AIVFSAKLTS VPSKSLYTKE 120
  121 NLYTGYSLFW AGLTVGISNL ICGIAVGITG STAAISDAAD SSLFVKILVV EIFGSVLGLF 180
  181 GLIVGLLMTG KAQEFS

Type	Start	End	Confidence
Cytoplasmic	1	6	0.80
Transmembrane Helix	7	25	0.90
Non-Cytoplasmic	26	41	0.76
Transmembrane Helix	42	64	0.90
Cytoplasmic	65	83	0.72
Transmembrane Helix	84	106	0.91
Non-Cytoplasmic	107	127	0.86
Transmembrane Helix	128	152	0.86
Cytoplasmic	153	166	0.71
Transmembrane Helix	167	188	0.93
Non-Cytoplasmic	189	196	0.83