YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11530, sp\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAEIKHRNS DKTFKFVTPP ADSSIEVLND FYWTDTDEPH VARRKMILQK YPEVTKLTGH  60
   61 EPKTKWYVMG VVLLQLGIAY YLRHTPVFSW KFLTLAYVIG ATANQAIFLA IHELSHNLLF 120
  121 RKPLHNKLFA VFANIPIGVP YSASFQPYHQ LHHKFLGDMY LDTDLPTEYE GRFLSSMPGK 180
  181 LFFAIFQIFF YALRPMFITQ IKFTYVHLVN VVFQLIFDHV MVTCWGWKAL GYFIVSTFLA 240
  241 GSLHPCAGHF IAEHYVLNEN NVPRHQKIGG TNISKELLPA ETYSYYGTLN MLTWNVGYHN 300
  301 EHHDFPYIAW TRLPELRRIA AEFYDPLPQV TSWCGVIWWF IFNDVNTVWN RVKREGKEKH 360
  361 GYRINRLDEN

Type	Start	End	Confidence
Cytoplasmic	1	65	0.97
Transmembrane Helix	66	84	0.93
Non-Cytoplasmic	85	91	0.80
Transmembrane Helix	92	112	0.91
Cytoplasmic	113	127	0.79
Transmembrane Helix	128	145	0.84
Non-Cytoplasmic	146	175	0.79
Transmembrane Helix	176	193	0.84
Cytoplasmic	194	202	0.62
Transmembrane Helix	203	222	0.70
Non-Cytoplasmic	223	228	0.51
Transmembrane Helix	229	251	0.73
Cytoplasmic	252	370	0.64