YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11477, orf...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCMWACPSVQ FVTFGFPAFC RRLPFFIDRL VVRIFFQSNS TQTVPLTLIN TSPTTMKTSI  60
   61 ILFMVTLWSL VLGGLTNNEL LKLVKNRKTK VLELNDENFE NILNGQRDYH LIALLTSEAP 120
  121 NLNCVLCREL APEYTIVANS WFQDHPNGVA EVELTEQEEK DGKKQPKNIY FFKSEFKDSK 180
  181 KLFSVLQLQN IPKMFYFPPT KHLGPNNYLR EKVEYQFFHG DHKELLKNWL IEVTDHRFNL 240
  241 YIPVNKTKIA INAIGTFIVV LLLRIFSKQV IQVITSRVIW CAASIISVIL FTTGYMFNQI 300
  301 RGTPYVMEHR DGRTEYFAPG QQSQFGVETQ IMSFLYGFLS ILVIVLVKRA PEIKNQSANL 360
  361 FLVATISSLI FVSFSLLLSI FGVKGVGFPY RFINFL

Type	Start	End	Confidence
Non-Cytoplasmic	1	248	0.69
Transmembrane Helix	249	266	0.77
Cytoplasmic	267	277	0.76
Transmembrane Helix	278	297	0.95
Non-Cytoplasmic	298	328	0.93
Transmembrane Helix	329	347	0.94
Cytoplasmic	348	359	0.82
Transmembrane Helix	360	382	0.93
Non-Cytoplasmic	383	396	0.91