YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11464, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	154	0.84
Transmembrane Helix	155	176	0.83
Non-Cytoplasmic	177	181	0.66
Transmembrane Helix	182	204	0.75
Cytoplasmic	205	214	0.69
Transmembrane Helix	215	235	0.79
Non-Cytoplasmic	236	252	0.78
Transmembrane Helix	253	276	0.82
Cytoplasmic	277	342	0.98
Transmembrane Helix	343	364	0.90
Non-Cytoplasmic	365	373	0.84
Transmembrane Helix	374	396	0.90
Cytoplasmic	397	403	0.88
Transmembrane Helix	404	424	0.94
Non-Cytoplasmic	425	437	0.76
Transmembrane Helix	438	459	0.88
Cytoplasmic	460	473	0.89
Transmembrane Helix	474	493	0.92
Non-Cytoplasmic	494	503	0.79
Transmembrane Helix	504	521	0.97
Cytoplasmic	522	588	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIEEYRPES DEKNVSTPSI VSLDDKTTNA SHISNAAQEN VDDYIAKFLD MSNTAKAEDE  60
   61 RDKTMPLKEC IKTFPKACFW SVVLSSALIM EGYDTNLLAS FYAYQGFAKK FGRYYENLGE 120
  121 YQVPAKDQLG LSMCYQTGQL VGVYIGAHLV DIIGYRYTLI PALASSIGLI FIQFFAPNVH 180
  181 VLMVSYVLLG INWGSYQTVC VSYAMDIAPT TLRLYLTTYI NCCWVFGQLI SSGVVKAISQ 240
  241 SSDPHAYRIA FAIQWIWPIP IMTGIFFAPE SPWFLVRKGR LEQAKHALER LLSQSEHIPD 300
  301 KSIISQSMLT KIQMTIKEED AVSAGSSIIE CFKGTNFRRT RIAAFTWLIQ NITGSSLMGY 360
  361 STYFYQNAGV PVSMSFTFSI IQYCLGIVGT IGSWFLSQKC GRFTIYFYGL CAMTVLLLLT 420
  421 GGMGTSDKKS LSMAVGSMLL VYTFVYDLTI GPMCYCIVGE MPSSKLRAKT VMLARNLYNI 480
  481 AGIIVAIVTP YMLNPTQWNW KAKSAFLWAG FAILSAIWVY FELPETKGRT FAELDKMFED 540
  541 KVPARKFKYT TPTTFDAGEM MEKMGNSGLK SIVHDTEHVE SSHIETKA