YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11433, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYYQQQMGN PQNMQFYQSN YSYQQPTNAQ GTSGMMGSMD SNFGSNIDVS GVMGNGELTP  60
   61 GLLAAFGTSG YPGEPPLLEE LGINFQHIRS KTLVVLNPLT KDIPSDIMAD SDLAGPILFV 120
  121 LLFGTLLLLA GKVQFGYIYG VGLFGIIGLH YLFKFMSNET TIDLIRSASV LGYCLLPLVL 180
  181 ISVLGVVTSL DNLVGYILSA IAVMWCTYSA SGFFVSVLKL HNVRPLIAYP LCMFYTVFAL 240
  241 MAIFVENVEE K

Type	Start	End	Confidence
Cytoplasmic	1	110	0.95
Transmembrane Helix	111	130	0.89
Non-Cytoplasmic	131	134	0.82
Transmembrane Helix	135	153	0.93
Cytoplasmic	154	166	0.77
Transmembrane Helix	167	188	0.90
Non-Cytoplasmic	189	195	0.73
Transmembrane Helix	196	217	0.93
Cytoplasmic	218	225	0.83
Transmembrane Helix	226	245	0.95
Non-Cytoplasmic	246	251	0.86