YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3997
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQASLFRIFR GASLTTTTAA ASFTATATAG ATTAKTLSGS TVLRKSYKRT YSSSVLSSPE  60
   61 LFFFHQFNNN KRYCHTTTTT NTKTIMSEQI PKTQKAVVFD TNGGQLVYKD YPVPTPKPNE 120
  121 LLIHVKYSGV CHTDLHAWKG DWPLATKLPL VGGHEGAGVV VGMGENVKGW KIGDFAGIKW 180
  181 LNGSCMSCEF CQQGAEPNCG EADLSGYTHD GSFEQYATAD AVQAAKIPAG TDLANVAPIL 240
  241 CAGVTVYKAL KTADLAAGQW VAISGAGGGL GSLAVQYARA MGLRVVAIDG GDEKGEFVKS 300
  301 LGAEAYVDFT KDKDIVEAVK KATDGGPHGA INVSVSEKAI DQSVEYVRPL GKVVLVGLPA 360
  361 HAKVTAPVFD AVVKSIEIKG SYVGNRKDTA EAIDFFSRGL IKCPIKIVGL SDLPEVFKLM 420
  421 EEGKILSRYV LDTS

Type	Start	End	Confidence
Signal Peptide	1	29	0.98
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	434	0.98