YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI10_CANAL
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSTVLSSY KLFAFIFIFR LANSFAIETF FQADEFFQAL EPAHHFVYGY GYLTWEWKQQ  60
   61 LRSAIHPLIY VLGYKLVGDN TTLVCISPKV INALIAAIGE YNLYKFIIVY DSEKLAWITL 120
  121 MLSLFNPFNW YVITRSFSNN LEMVFTVLAL RFWPWNKKIN GSWYISLGFG FVSCIIRPTN 180
  181 ILIWIPLGIW LLISIRITLK WVALSFLEVV LILLINTALD YYFYQKLTFP LYNFLEFNVF 240
  241 KNLSIFYGTA PWYFYIFQAI PLMLMLYLPL MIYGLKKNIL LLTGLFYIIG FSLIQHKEFR 300
  301 FIYPIHPILL YFTARGYVKF KPKFVLLGIL LNICIGLFFT NVHERGVIDL TKYLATQQTP 360
  361 SVGFITPCHS TPWQSYFHNP NLDTNSWFLA CEPPLHLNKP SMEEIRHYRD QSDQFYDAPE 420
  421 SFLQTHLGKD LPKTEQLVVF EPLEPLMNDY LGREYYECQR FYNSFFHWDS RRDGDIIVYC 480
  481 RN

Type	Start	End	Confidence
Cytoplasmic	1	11	0.71
Transmembrane Helix	12	27	0.60
Non-Cytoplasmic	28	84	0.54
Transmembrane Helix	85	99	0.28
Cytoplasmic	100	114	0.60
Transmembrane Helix	115	134	0.71
Non-Cytoplasmic	135	162	0.73
Transmembrane Helix	163	187	0.80
Cytoplasmic	188	200	0.65
Transmembrane Helix	201	223	0.87
Non-Cytoplasmic	224	251	0.86
Transmembrane Helix	252	271	0.88
Cytoplasmic	272	278	0.72
Transmembrane Helix	279	296	0.87
Non-Cytoplasmic	297	323	0.67
Transmembrane Helix	324	342	0.84
Cytoplasmic	343	482	0.68