YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3939
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPMTLLLKV TLWTCHIYIF VVVFLPFSVH FTTDRTNFAR KKIEPIQRAE KNAHLKNVLE  60
   61 IHHSNQTLTT VYHPLNPMSS DPILVKKKLL QIASTGKYAT FTPEQLHTHY EELQDFSILN 120
  121 QDSLLDSIEL FNLYELQFYL SILTLHDIEA KNVLDKICDQ FDFKDSNKNK GRSQRIKILQ 180
  181 SVYAESKGEI ETASKLLSED PDELRLSRRL TTLSRHDKNP TKYINNLIYY LNLQPSDLIA 240
  241 WAELSEQYQK LGNYDKSIYC LKEVVLQNPL AYPIFYKIGL LYYYLFLQNE GNLKTDKKDK 300
  301 LFELMKILIN SRDNYLYSLE INDKYEKNWV GLKTIASLPF NDKLKKISES SKEIKDYLNY 360
  361 NEKLKPIIDR KLKELNISI

Type	Start	End	Confidence
Cytoplasmic	1	9	0.81
Transmembrane Helix	10	31	0.87
Non-Cytoplasmic	32	379	0.91