YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3900
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSHPDTQV LRPYYDHDTF NAGYSVIFKK GVGIIDPKTN RPVTSNISEK LINQSIDENQ  60
   61 GIIRNSFKHG GPVGINATSD KNYVYDLEFN EYFESNNLIE VFKNLLGNFV RSYIKVLLTQ 120
  121 PLEIVRLVLQ VGKFNFSETA SKTSKKLDLS KSKRLLSETE DDTEATTEQD EHEYTRPQRS 180
  181 SIYDSDRDVD NEDEDEEPIN YFQSQNEQQV WSGHEVGGFN KTATPTKQGK KSYRDDKKRL 240
  241 RNNKIKPKSL HTADILTAII NKDGPFAVFR GINASFIYQT LSHTIEAWIT GFASPFLGIP 300
  301 DPFFLDLTHS NDPFKSLWLS VTACVLTGIV LMPLDLIRVK FMITQFNSKP LNENDALEEV 360
  361 TEEIVQSTRS VRESIRNFPV YYLLHPSTPI VFLTTLHQLS TSIFRKMAPY ILFIKFNIDS 420
  421 YSSPNIYTFV NLLSLILEFF IKLPVENLLR KQQVQFLLTP KREDTKKVIT IEDPKKSLIV 480
  481 EFNDSSKDIQ DSTFWERLKQ LGLFNGWRIG VLNVIGFWGY NIIKSDGSEL KEERL

Type	Start	End	Confidence
Cytoplasmic	1	279	0.63
Transmembrane Helix	280	299	0.58
Non-Cytoplasmic	300	316	0.76
Transmembrane Helix	317	337	0.88
Cytoplasmic	338	377	0.81
Transmembrane Helix	378	399	0.60
Non-Cytoplasmic	400	425	0.61
Transmembrane Helix	426	441	0.54
Cytoplasmic	442	503	0.70
Transmembrane Helix	504	522	0.45
Non-Cytoplasmic	523	535	0.57