YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1643
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPFTKLTSN ICLKNHFFSN GNLLSLSLKN MRQQKVLSFR SNIQLLQSNF IPIRGYIRET  60
   61 VYQQTRNSPL RRSSTWKQYN SFYNRSNWDK LKKPLLFTIA FCVGTTLVTP YLFTYTPLSY 120
  121 FKRNPQSLLW SLIGINGAVF LMWRIPRLQW FTMKYGILFK DNLQSPWTLL GSAFSHQSFA 180
  181 HFFINMLAFQ SFGSTLVAFL GVSNFTIMYL NSAVISSFAS LAIPMFLGSS LSVASLGASG 240
  241 AIFSVFGVFS FLFPASPVGL FFIPIPGGAW MLFLGTTLWN AAGTVLRWGT FDYAAHLGGS 300
  301 IVGIAYGYWY NRKRKQQIRR RRHTLDF

Type	Start	End	Confidence
Cytoplasmic	1	94	0.96
Transmembrane Helix	95	115	0.94
Non-Cytoplasmic	116	126	0.84
Transmembrane Helix	127	145	0.95
Cytoplasmic	146	181	0.79
Transmembrane Helix	182	202	0.76
Non-Cytoplasmic	203	218	0.48
Transmembrane Helix	219	253	0.72
Cytoplasmic	254	257	0.42
Transmembrane Helix	258	279	0.71
Non-Cytoplasmic	280	292	0.75
Transmembrane Helix	293	310	0.98
Cytoplasmic	311	327	0.92